Getting started¶
Local installs and Web site¶
- make sure you are using the latest version of Google Chrome
- here is an etherpad link for copy/paste
Software we’ll be using on the server¶
- Trimmomatic
- FastQC
- khmer
- bowtie2
- a few custom scripts in the workshop repository
The Dockerfile shows the basic installation instructions for an Ubuntu machine.
A first test¶
Click here:
Once you’re at the console, go to New... Terminal... and copy/paste this text into it:
echo hello, world
If it doesn’t work, could you e-mail me with your browser and OS version, please?
If copy/paste doesn’t work for you, you can do the following:
open a new file in the editor, and name it ‘commands.sh’;
copy/paste stuff into commands.sh, clearing it each time;
to execute the commands, run:
. commands.sh
Next: Some background
LICENSE: This documentation and all textual/graphic site content is licensed under the Creative Commons - 0 License (CC0) -- fork @ github. Presentations (PPT/PDF) and PDFs are the property of their respective owners and are under the terms indicated within the presentation.